Package: spacemodR
Title: Wildlife Chemical Risk Mapping Through Food Webs
Version: 0.3.5
Date: 2026-10-14
Authors@R: 
    c(person("Virgile", "Baudrot", email = "virgile.baudrot@qonfluens.com", role = c("aut", "cre", "cph")),
      person("Léa", "Bariod", email = "lea.bariod@univ-fcomte.fr", role = "aut"),
      person("Clémentine", "Fritsch", email = "clementine.fritsch@univ-fcomte.fr", role = c("aut", "cph")),
      person("Renaud", "Scheifler", email = "renaud.scheifler@univ-fcomte.fr", role = "aut"),
      person("Quentin", "Devalloir", email = "quentin.devalloir@qonfluens.com", role = "aut")
    )
Description: A workflow to map the risk of chemicals for wildlife:
        habitat, food web, dispersal, exposure and risk. Starting from
        a raster of chemical concentrations in the environment (e.g.,
        metals in soil, pesticides in fields), the package builds
        habitat layers for a set of species, organises them in a
        directed acyclic graph representing a food web, and propagates
        the flow of elements (e.g., food, energy, chemicals) along its
        links. It also provides soil interpolation by kriging,
        dispersal by kernel convolution or by circuit theory (through
        the optional 'Julia' package 'Omniscape'), land cover retrieval
        for France ('OCS-GE') and Europe ('EUNIS'), and Bayesian
        calibration of transfer models with 'Stan'.
License: MIT + file LICENSE
URL: https://github.com/Qonfluens/spacemodR,
        https://qonfluens.github.io/spacemodR/
BugReports: https://github.com/Qonfluens/spacemodR/issues
Imports: dplyr, ggplot2, httr, methods, patchwork, Rcpp (>= 0.12.0),
        rlang, rstan (>= 2.18.1), rstantools (>= 2.4.0), sf, terra,
        tools
Encoding: UTF-8
LazyData: true
Suggests: archive, knitr, rmarkdown, testthat (>= 3.0.0), JuliaCall,
        tidyterra, scales, purrr, quarto, tidyr, leaflet, gstat
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make, Julia (optional, for dispersal with
        'Omniscape')
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
Repository: https://qonfluens.r-universe.dev
Date/Publication: 2026-10-14 09:40:09 UTC
RemoteUrl: https://github.com/qonfluens/spacemodr
RemoteRef: HEAD
RemoteSha: 22367e37e4fdfabababa5f5e97a8eb3d677e4cdf
NeedsCompilation: yes
Packaged: 2026-10-14 14:10:58 UTC; root
Author: Virgile Baudrot [aut, cre, cph],
  Léa Bariod [aut],
  Clémentine Fritsch [aut, cph],
  Renaud Scheifler [aut],
  Quentin Devalloir [aut]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>